Last Modified
1 January 2024
Books
Molecular Modeling
Homology Modeling Reference for HyperChem
English, 62 pages
Usage of the user interfaces in Homology Modeling for HyperChem, as well as their individual functions, are explained in the first half of this book.
In the second half of this book, a homology modeling for human Rhodopsin is practiced using Homology Modeling for HyperChem running on HyperChem program.
Moreover, an analysis procedure for the structural changes between apo and holo structures of Retinol-binding protein is explained using low-temperature molecular dynamics annealing approaches supported by Homology Modeling for HyperChem.
These samples explained here are attached to Homology Modeling for HyperChem package as the test samples.
Contents
Recommended Minimum System Requirements
Software Requirements
Installation
Installation of TclPro1.2
Installation of Homology Modeling for HyperChem
User Interfaces
All Programs
Estimation of Hydrogen Atoms in Water
Geometry Correction
Homology Modeling
Interface Selection
Protein Superposition
Ramachandran Plot
Restraints
Side Chain Rotamer Modeling
Tutorial 1 for Homology Modeling
Tutorial 2 for Homology Modeling
Appendix
Manual Side-Chain Rotamer Modeling